Usage
=====

.. _install:

Installation
------------

To use exm-toolbox, first install it using pip:

.. code-block:: console

   (.venv) $ pip install git+https://github.com/RuihanZhang2015/ExSeq-Toolbox

.. _getting_started:

Step-by-step Guide
-------------------

.. toctree::
   :glob:
   :maxdepth: 1
      
   tutorials/pipeline_parameter
   tutorials/volume_alignment
   tutorials/alignment_evaluation
   tutorials/puncta_extraction
   tutorials/puncta_basecalling